BRAIN-MATCH
Tumor bulk data focus
Tumor single cell data focus
Input:
cb_astroglia_mnp12_EPN_v3
cb_GC_UBC_mnp12_MB_v3
cb_main_CBTN_RNAseq
cb_main_INFORM_RNAseq
cb_main_MB_RIG
cb_main_MB_RNAseq_MYC_MYCN
cb_main_mnp12_MethClass_v3
cb_main_mnp12_MolClass_v3
cb_oligo_PA_DMG_K27_RNAseq
Number of normal highly varabile genes
Number of tumor highly variable genes
Cluster based on similarity
Filter based on limits:
Min correlation
Min GSVA enrichment
Visualisation
Data description
Common differentially expressed genes (tumor class + normal cell type)
Click on a target circle in the comparison plot for selection
Normal control
Tumor target
Input:
Astro_PFA1_10x_a
Astro_PFA1_10x_c
Astro_PFA1_10x_f
Astro_PFA1_10x_g
Astro_PFA1_10x_i
Astro_PFA1_10x_j
Astro_PFA1_10x_l
Astro_PFA1_10x_m
Astro_PFA1_10x_n
Astro_PFA1_10x_o
Astro_PFA1_10x_p
Astro_PFA2_10x_a
Astro_PFA2_10x_b
Astro_PFA2_10x_c
Astro_PFA2_10x_d
Astro_PFA2_10x_e
Astro_PFA2_10x_f
Astro_PFA2_10x_g
Astro_PFA2_10x_h
Astro_PFA2_10x_i
Astro_PFB_10x_a
CB_G3_10x_a
CB_G3_10x_b
CB_G3_10x_c
CB_G3_10x_d
CB_G3_10x_e
CB_G3_10x_f
CB_G3_10x_g
CB_G3_10x_h
CB_G3_10x_i
CB_G4_10x_a
CB_G4_10x_b
CB_G4_10x_c
CB_G4_10x_d
CB_G4_10x_e
CB_G4_10x_f
CB_G4_10x_g
CB_G4_10x_h
CB_G4_10x_i
CB_G4_10x_j
CB_G4_10x_k
CB_G4_10x_l
CB_G4_10x_m
CB_G4_10x_n_2
CB_G4_10x_n
CB_G4_10x_o
CB_G4_10x_p
CB_PA_10x_a
CB_PA_10x_b
CB_PA_10x_c
CB_PFA1_10x_a
CB_PFA1_10x_c
CB_PFA1_10x_f
CB_PFA1_10x_g
CB_PFA1_10x_i
CB_PFA1_10x_j
CB_PFA1_10x_l
CB_PFA1_10x_m
CB_PFA1_10x_n
CB_PFA1_10x_o
CB_PFA1_10x_p
CB_PFA2_10x_a
CB_PFA2_10x_b
CB_PFA2_10x_c
CB_PFA2_10x_d
CB_PFA2_10x_e
CB_PFA2_10x_f
CB_PFA2_10x_g
CB_PFA2_10x_h
CB_PFA2_10x_i
CB_PFB_10x_a
CB_SHH_10x_a
CB_SHH_10x_b
CB_SHH_10x_c
CB_SHH_10x_d
CB_SHH_10x_e
CB_SHH_10x_f
CB_SHH_10x_g
CB_SHH_10x_h
CB_SHH_10x_i
CB_SHH_10x_j
CB_SHH_10x_k
GC_G3_10x_a
GC_G3_10x_b
GC_G3_10x_c
GC_G3_10x_d
GC_G3_10x_e
GC_G3_10x_f
GC_G3_10x_g
GC_G3_10x_h
GC_G3_10x_i
GC_G4_10x_a
GC_G4_10x_b
GC_G4_10x_c
GC_G4_10x_d
GC_G4_10x_e
GC_G4_10x_f
GC_G4_10x_g
GC_G4_10x_h
GC_G4_10x_i
GC_G4_10x_j
GC_G4_10x_k
GC_G4_10x_l
GC_G4_10x_m
GC_G4_10x_n_2
GC_G4_10x_n
GC_G4_10x_o
GC_G4_10x_p
GC_SHH_10x_a
GC_SHH_10x_b
GC_SHH_10x_c
GC_SHH_10x_d
GC_SHH_10x_e
GC_SHH_10x_f
GC_SHH_10x_g
GC_SHH_10x_h
GC_SHH_10x_i
GC_SHH_10x_j
GC_SHH_10x_k
Oligo_PA_10x_a
Oligo_PA_10x_b
Oligo_PA_10x_c
Annotation:
Cell_state
Cell_subtype
Status